Kerbal Space Program

KSP version:
build id = 00861
2015.06.23 at 17:19:17 CEST
Branch: master

Version 1.0.4 (bought on steam)

Using Windows 7 Profesional Service Pack 1 64bit system
Intel Core i7-3770 CPU @ 3.4GHz 16GB Ram

System data: (in the attached DxDiag.txt)

I build any craft, launch and when i try to time warp - ship falls appart / explodes or freezes. It locks the speed but does not move in any direction relative to the planet.

Files include:
New career files:
Joe II.craft - the ship that already fell apart in quicksave#1

Autosaved Ship - the one that i launch in bug01 and bug02.
To repeat the bug, just start the time warp on bug02.

On the continous screenshots you can observe the apoapsis change without the change of the ships position.
Some times in the game loaded on bug02 the ship accelerates or explodes.

Problem occurs in some crafts from the previous career:
Minmus Krane 2 when starting from Minmus. Just get above 3000m and hit time warp.